Zhang H. $, Li S. $, Yang L. $, Cai G. $, Chen H., Gao D., Lin T., Cui Q., Wang D., Li Z., Cai R., Bai S., Lucas W.J., Huang S., Zhang Z. #, and Sun J. # Gain-of-function of the 1-aminocyclopropane-1-carboxylate synthase gene ACS1G induces female flower development in cucumber gynoecy. Plant Cell, 2020, doi.org/10.1093/plcell/koaa018.
Zhao G. $, Lian Q. $, Zhang Z. $, Fu Q. $, He Y., Ma S., Ruggieri V., Monforte A.J., Wang P., Julca I., Wang H., Liu J., Xu Y., Wang R., Ji J., Xu Z., Kong W., Zhong Y., Shang J., Pereira L., Argyris J., Zhang J., Mayobre C., Pujol M., Oren E., Ou D., Wang J., Sun D., Zhao S., Zhu Y., Li N., Katzir N., Gur A., Dogimont C., Schaefer H., Fan W., Bendahmane A., Fei Z., Pitrat M., Gabaldon T., Lin T., Garcia-Mas J. #, Xu Y. #, and Huang S. # A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits. Nat Genet, 2019, 51:1607-1615.
Xie D. $, Xu Y. $, Wang J., Liu W., Zhou Q., Luo S., Huang W., He X., Li Q., Peng Q., Yang X., Yuan J., Yu J., Wang X., Lucas W.J., Huang S., Jiang B. #, and Zhang Z. # The wax gourd genomes offer insights into the genetic diversity and ancestral cucurbit karyotype. Nature communications, 2019, 10(1):5158.
Zhang Z. $, Wang B. $, Wang S. $, Lin T. #, Yang L., Zhao Z., Zhang Z., Huang S., Yang X. # Genome-wide Target Mapping Shows Histone Deacetylase Complex 1 Regulates Cell Proliferation in Cucumber Fruit. Plant Physiology, 2019.8.4, 00532.
Li Q. $, Li H. $, Huang W. $, Xu Y., Zhou Q., Wang S., Ruan J., Huang S., and Zhang Z. # A chromosome-scale genome assembly of cucumber (Cucumis sativus L.). Gigascience, 2019; 8(6):1-10.
Xin T. $, Zhang Z. $, Li S., Zhang S., Li Q., Zhang Z.H., Huang S., and Yang X. # Genetic Regulation of Ethylene Dosage for Cucumber Fruit Elongation. Plant Cell, 2019, 31(5):1063-1076.
Zhu G$, Wang S$, Huang Z, Zhang S, Liao Q, Zhang C, Lin T, Qin M, Peng M, Yang C, Cao X, Han X, Wang X, van der Knaap E, Zhang Z, Cui X, Klee H, Fernie AR, Luo J#, Huang S#. Rewiring of the Fruit Metabolome in Tomato Breeding. Cell. 2018;172(1-2):249-61.
Wang Y, Zhou Q, Zhu G, Wang S, Ma Y, Miao H, Zhang S, Huang S, Zhang Z#, Gu X#. Genetic analysis and identification of a candidate gene associated with in vitro regeneration ability of cucumber. Theor Appl Genet. 2018;131(12):2663-75.
Xiang C$, Duan Y$, Li H, Ma W, Huang S, Sui X#, Zhang Z#, Wang C#. A High-Density EST-SSR-Based Genetic Map and QTL Analysis of Dwarf Trait in Cucurbita pepo L. Int J Mol Sci. 2018;19(10).
Xu C$, Jiao C$, Sun H, Cai X, Wang X, Ge C, Zheng Y, Liu W, Sun X, Xu Y, Deng J, Zhang Z, Huang S, Dai S, Mou B, Wang Q, Fei Z#, Wang Q#. Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions. Nat Commun. 2017;8:15275.
Gao D$, Zhang C$, Zhang S$, Hu B, Wang S, Zhang Z, Huang S#. Mutation in a novel gene SMALL AND CORDATE LEAF 1 affects leaf morphology in cucumber. J Integr Plant Biol. 2017;59(10):736-41.
Zhou Y$, Ma Y$, Zeng J$, Duan L$, Xue X, Wang H, Lin T, Liu Z, Zeng K, Zhong Y, Zhang S, Hu Q, Liu M, Zhang H, Reed J, Moses T, Liu X, Huang P, Qing Z, Liu X, Tu P, Kuang H, Zhang Z, Osbourn A, Ro DK, Shang Y, Huang S#. Convergence and divergence of bitterness biosynthesis and regulation in Cucurbitaceae. Nat Plants. 2016;2:16183.
Lin T$, Wang S$, Zhong Y$, Gao D, Cui Q, Chen H, Zhang Z, Shen H, Weng Y, Huang S#. A Truncated F-Box Protein Confers the Dwarfism in Cucumber. J Genet Genomics. 2016;43(4):223-6.
Chen H$, Sun J$, Li S$, Cui Q, Zhang H, Xin F, Wang H, Lin T, Gao D, Wang S, Li X, Wang D, Zhang Z, Xu Z, Huang S#. An ACC Oxidase Gene Essential for Cucumber Carpel Development. Mol Plant. 2016;9(9):1315-27.
Bu F$, Chen H$, Shi Q, Zhou Q, Gao D, Zhang Z, Huang S#. A major quantitative trait locus conferring subgynoecy in cucumber. Theor Appl Genet. 2016;129(1):97-104.
Zhou Q$, Wang S$, Hu B$, Chen H, Zhang Z#, Huang S#. An ACCUMULATION AND REPLICATION OF CHLOROPLASTS 5 gene mutation confers light green peel in cucumber. J Integr Plant Biol. 2015;57(11):936-42.
Zhou Q$, Miao H$, Li S$, Zhang S, Wang Y, Weng Y, Zhang Z#, Huang S#, Gu X#. A Sequencing-Based Linkage Map of Cucumber. Mol Plant. 2015;8(6):961-3.
Zhang Z$, Mao L$, Chen H$, Bu F$, Li G$, Sun J, Li S, Sun H, Jiao C, Blakely R, Pan J, Cai R, Luo R, Van de Peer Y, Jacobsen E, Fei Z#, Huang S#. Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber. Plant Cell. 2015;27(6):1595-604.
Wang S$, Yang X$, Xu M, Lin X, Lin T, Qi J, Shao G, Tian N, Yang Q, Zhang Z, Huang S#. A Rare SNP Identified a TCP Transcription Factor Essential for Tendril Development in Cucumber. Mol Plant. 2015;8(12):1795-808.
Shang Y$, Ma Y$, Zhou Y$, Zhang H$, Duan L, Chen H, Zeng J, Zhou Q, Wang S, Gu W, Liu M, Ren J, Gu X, Zhang S, Wang Y, Yasukawa K, Bouwmeester HJ, Qi X, Zhang Z, Lucas WJ, Huang S#. Biosynthesis, regulation, and domestication of bitterness in cucumber. Science. 2014;346(6213):1084-8.
Lu H$, Lin T$, Klein J, Wang S, Qi J, Zhou Q, Sun J, Zhang Z, Weng Y, Huang S#. QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber. Theor Appl Genet. 2014;127(7):1491-9.
Lin T$, Zhu G$, Zhang J$, Xu X$, Yu Q$, Zheng Z$, Zhang Z, Lun Y, Li S, Wang X, Huang Z, Li J, Zhang C, Wang T, Zhang Y, Wang A, Zhang Y, Lin K, Li C, Xiong G, Xue Y, Mazzucato A, Causse M, Fei Z, Giovannoni JJ, Chetelat RT, Zamir D, Stadler T, Li J#, Ye Z#, Du Y#, Huang S#. Genomic analyses provide insights into the history of tomato breeding. Nat Genet. 2014;46(11):1220-6.
Lin K$, Limpens E$, Zhang Z, Ivanov S, Saunders DGO, Mu D, Pang E, Cao H, Cha H, Lin T, Zhou Q, Shang Y, Li Y, Sharma T, van Velzen R, de Ruijter N, Aanen DK, Win J, Kamoun S, Bisseling T, Geurts R, Huang S#. Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus. PLoS Genet. 2014;10(1):e1004078.
Zhang C$, Liu L$, Zheng Z, Sun Y, Zhou L, Yang Y, Cheng F, Zhang Z, Wang X, Huang S, Xie B, Du Y, Bai Y, Li J#. Fine mapping of the Ph-3 gene conferring resistance to late blight (Phytophthora infestans) in tomato. Theor Appl Genet. 2013;126(10):2643-53.
Sun J$, Zhang Z$, Zong X, Huang S, Li Z, Han Y#. A high-resolution cucumber cytogenetic map integrated with the genome assembly. BMC Genomics. 2013;14:461.
Sharma SK$, Bolser D, de Boer J, Sonderkaer M, Amoros W, Carboni MF, D'Ambrosio JM, de la Cruz G, Di Genova A, Douches DS, Eguiluz M, Guo X, Guzman F, Hackett CA, Hamilton JP, Li G, Li Y, Lozano R, Maass A, Marshall D, Martinez D, McLean K, Mejia N, Milne L, Munive S, Nagy I, Ponce O, Ramirez M, Simon R, Thomson SJ, Torres Y, Waugh R, Zhang Z, Huang S, Visser RG, Bachem CW, Sagredo B, Feingold SE, Orjeda G, Veilleux RE, Bonierbale M, Jacobs JM, Milbourne D, Martin DM, Bryan GJ#. Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps. G3 2013;3(11):2031-47.
Qi J$, Liu X$, Shen D$, Miao H$, Xie B$, Li X$, Zeng P, Wang S, Shang Y, Gu X, Du Y, Li Y, Lin T, Yuan J, Yang X, Chen J, Chen H, Xiong X, Huang K, Fei Z, Mao L, Tian L, Stadler T, Renner SS, Kamoun S, Lucas WJ, Zhang Z#, Huang S#. A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity. Nat Genet. 2013;45(12):1510-5.
Lou Q$, He Y, Cheng C, Zhang Z, Li J, Huang S, Chen J#. Integration of high-resolution physical and genetic map reveals differential recombination frequency between chromosomes and the genome assembling quality in cucumber. PLoS ONE. 2013;8(5):e62676.
Guo S$, Zhang J$, Sun H$, Salse J$, Lucas WJ, Zhang H, Zheng Y, Mao L, Ren Y, Wang Z, Min J, Guo X, Murat F, Ham BK, Zhang Z, Gao S, Huang M, Xu Y, Zhong S, Bombarely A, Mueller LA, Zhao H, He H, Zhang Y, Zhang Z, Huang S, Tan T, Pang E, Lin K, Hu Q, Kuang H, Ni P, Wang B, Liu J, Kou Q, Hou W, Zou X, Jiang J, Gong G, Klee K, Schoof H, Huang Y, Hu X, Dong S, Liang D, Wang J, Wu K, Xia Y, Zhao X, Zheng Z, Xing M, Liang X, Huang B, Lv T, Wang J, Yin Y, Yi H, Li R, Wu M, Levi A, Zhang X, Giovannoni JJ, Wang J#, Li Y#, Fei Z#, Xu Y#. The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nat Genet. 2013;45(1):51-8.
Tomato Genome Consortium. The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 2012;485(7400):635-41.
Lv J$, Qi J$, Shi Q$, Shen D$, Zhang S$, Shao G, Li H, Sun Z, Weng Y, Shang Y, Gu X, Li X, Zhu X, Zhang J, van Treuren R, van Dooijeweert W, Zhang Z, Huang S#. Genetic Diversity and Population Structure of Cucumber (Cucumis sativus L.). PLoS One. 2012;7(10):e46919.
Zhao X$, Lu J, Zhang Z, Hu J, Huang S, Jin W#. Comparison of the distribution of the repetitive DNA sequences in three variants of Cucumis sativus reveals their phylogenetic relationships. J Genet Genomics. 2011;38(1):39-45.
Wang X$#, Wang H#, Wang J#, Sun R#, Wu J$, Liu S$, Bai Y$, Mun JH$, Bancroft I$, Cheng F, Huang S, Li X, Hua W, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J, Deng J, Kim JA, Yu J, Meng J, Min J, Poulain J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Sato S, Sun S, Kwon SJ, Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Z, Li Z, Xiong Z, Zhang Z. The genome of the mesopolyploid crop species Brassica rapa. Nat Genet. 2011;43(10):1035-9.
The Potato Genome Sequencing Consortium. Genome sequence and analysis of the tuber crop potato. Nature. 2011;475(7355):189-95.
Miao H$, Zhang S, Wang X, Zhang Z, Li M, Mu S, Cheng Z, Zhang R, Huang S, Xie B, Fang Z, Zhang Z, Weng Y, Gu X#. A linkage map of cultivated cucumber (Cucumis sativus L.) with 248 microsatellite marker loci and seven genes for horticulturally important traits. Euphytica. 2011;(2):167-76.
Li Z$, Zhang Z$, Yan P, Huang S, Fei Z, Lin K#. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics. 2011;12(1):540.
Han Y$, Zhang Z, Huang S, Jin W#. An integrated molecular cytogenetic map of Cucumis sativus L. chromosome 2. BMC Genet. 2011;12(1):18.
Liu C$, Liu J, Li H, Zhang Z, Han Y, Huang S, Jin W#. Karyotyping in melon (Cucumis melo L.) by cross-species fosmid fluorescence in situ hybridization. Cytogenet Genome Res. 2010;129(1-3):241-9.
Kang H$, Weng Y, Yang Y, Zhang Z, Zhang S, Mao Z, Cheng G, Gu X, Huang S#, Xie B#. Fine genetic mapping localizes cucumber scab resistance gene Ccu into an R gene cluster. Theor Appl Genet. 2010.
Guo S$, Zheng Y$, Joung JG, Liu S, Zhang Z, Crasta OR, Sobral BW, Xu Y, Huang S#, Fei Z#. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics. 2010;11:384.
Ren Y$, Zhang Z$, Liu J$, Staub JE, Han Y, Cheng Z, Li X, Lu J, Miao H, Kang H, Xie B, Gu X, Wang X, Du Y, Jin W, Huang S#. An Integrated Genetic and Cytogenetic Map of the Cucumber Genome. PLoS ONE. 2009;4(6):e5795.
Mueller LA$, Lankhorst RK, Tanksley SD, Giovannoni JJ, White R, Vrebalov J, Fei Z, van Eck J, Buels R, Mills AA, Menda N, Tecle IY, Bombarely A, Stack S, Royer SM, Chang S-B, Shearer LA, Kim BD, Jo S-H, Hur C-G, Choi D, Li C-B, Zhao J, Jiang H, Geng Y, Dai Y, Fan H, Chen J, Lu F, Shi J, Sun S, Chen J, Yang X, Lu C, Chen M, Cheng Z, Li C, Ling H, Xue Y, Wang Y, Seymour GB, Bishop GJ, Bryan G, Rogers J, Sims S, Butcher S, Buchan D, Abbott J, Beasley H, Nicholson C, Riddle C, Humphray S, McLaren K, Mathur S, Vyas S, Solanke AU, Kumar R, Gupta V, Sharma AK, Khurana P, Khurana JP, Tyagi A, Sarita, Chowdhury P, Shridhar S, Chattopadhyay D, Pandit A, Singh P, Kumar A, Dixit R, Singh A, Praveen S, Dalal V, Yadav M, Ghazi IA, Gaikwad K, Sharma TR, Mohapatra T, Singh NK, Szinay D, de Jong H, Peters S, van Staveren M, Datema E, Fiers MWEJ, van Ham RCHJ, Lindhout P, Philippot M, Frasse P, Regad F, Zouine M, Bouzayen M, Asamizu E, Sato S, Fukuoka H, Tabata S, Shibata D, Botella MA, Perez-Alonso M, Fernandez-Pedrosa V, Osorio S, Mico A, Granell A, Zhang Z, He J, Huang S, Du Y, Qu D, Liu L, Liu D, Wang J, Ye Z, Yang W, Wang G, Vezzi A, Todesco S, Valle G, Falcone G, Pietrella M, Giuliano G, Grandillo S, Traini A, D'Agostino N, Chiusano ML, Ercolano M, Barone A, Frusciante L, Schoof H, Jcker A, Bruggmann R, Spannagl M, Mayer KXF, Guig R, Camara F, Rombauts S, Fawcett JA, Van de Peer Y, Knapp S, Zamir D#, Stiekema W#. A Snapshot of the Emerging Tomato Genome Sequence. Plant Genome. 2009;2(1):78-92.
Liu QP$#, Wang HS, Zhang ZH, Wu JS, Feng Y, Zhu ZJ#. Divergence in function and expression of the NOD26-like intrinsic proteins in plants. BMC Genomics. 2009;10(1):313.
Li Z$, Huang S$, Liu S, Pan J, Zhang Z, Tao Q, Shi Q, Jia Z, Zhang W, Chen H, Si L, Zhu L, Cai R#. Molecular Isolation of the M Gene Suggests That a Conserved-Residue Conversion Induces the Formation of Bisexual Flowers in Cucumber Plants. Genetics. 2009;182(4):1381-5.
Huang S$#, Li R$, Zhang Z$, Li L$, Gu X$, Fan W$, Lucas WJ$, Wang X, Xie B, Ni P, Ren Y, Zhu H, Li J, Lin K, Jin W, Fei Z, Li G, Staub J, Kilian A, van der Vossen EAG, Wu Y, Guo J, He J, Jia Z, Ren Y, Tian G, Lu Y, Ruan J, Qian W, Wang M, Huang Q, Li B, Xuan Z, Cao J, Asan, Wu Z, Zhang J, Cai Q, Bai Y, Zhao B, Han Y, Li Y, Li X, Wang S, Shi Q, Liu S, Cho WK, Kim J-Y, Xu Y, Heller-Uszynska K, Miao H, Cheng Z, Zhang S, Wu J, Yang Y, Kang H, Li M, Liang H, Ren X, Shi Z, Wen M, Jian M, Yang H, Zhang G, Yang Z, Chen R, Liu S, Li J, Ma L, Liu H, Zhou Y, Zhao J, Fang X, Li G, Fang L, Li Y, Liu D, Zheng H, Zhang Y, Qin N, Li Z, Yang G, Yang S, Bolund L, Kristiansen K, Zheng H, Li S, Zhang X, Yang H, Wang J, Sun R, Zhang B, Jiang S, Wang J#, Du Y#, Li S#. The genome of the cucumber, Cucumis sativus L. Nat Genet. 2009;41(12):1275-81.
Han Y$, Zhang Z$, Liu C, Liu J, Huang S, Jiang J, Jin W#. Centromere repositioning in cucurbit species: Implication of the genomic impact from centromere activation and inactivation. PNAS. 2009;106(35):14937-41.
Han YH$, Zhang ZH, Liu JH, Lu JY, Huang SW, Jin WW#. Distribution of the tandem repeat sequences and karyotyping in cucumber (Cucumis sativus L.) by fluorescence in situ hybridization. Cytogenetic and Genome Research. 2008;122(1):80-8.
Zhang Z$, Deng Y$, Tan J$, Hu S, Yu J, Xue Q#. A genome-wide microsatellite polymorphism database for the indica and japonica rice. DNA Res. 2007;14(1):37-45.
编写著作
Zhang, Z., He, J., and Huang, S#., Chapter 11 Cucumber Genomics, in Genetics, Genomics and Breeding of Cucurbits, Wang, Y.-H., Behera, T.K., and Chittaranjan, K., Editors. Science Publishers. 2011, p. 335-352.
Huang, S#. and Zhang, Z., Chapter11 Comparative Genome Sequencing of Tomato and Potato: Methods and Analysis, in Genetics, Genomics, and Breeding of Tomato, Liedl, E.B., et al., Editors. Science Publishers. 2013,p. 361-380.
Bai Y, Zhang Z#, Fei Z#. Databases and Bioinformatics for Cucurbits Species. In: Grumet R, Katzir N, Garcia-Mas J, editors. Genetics and Genomics of Cucurbitaceae: Springer Nature; 2017.